[INFO] fetching crate libprosic 0.7.3...
[INFO] building libprosic-0.7.3 against master#881c1ac408d93bb7adaa3a51dabab9266e82eee8 for issue-85264
[INFO] extracting crate libprosic 0.7.3 into /workspace/builds/worker-8/source
[INFO] validating manifest of crates.io crate libprosic 0.7.3 on toolchain 881c1ac408d93bb7adaa3a51dabab9266e82eee8
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+881c1ac408d93bb7adaa3a51dabab9266e82eee8" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking crates.io crate libprosic 0.7.3
[INFO] finished tweaking crates.io crate libprosic 0.7.3
[INFO] tweaked toml for crates.io crate libprosic 0.7.3 written to /workspace/builds/worker-8/source/Cargo.toml
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+881c1ac408d93bb7adaa3a51dabab9266e82eee8" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update", kill_on_drop: false }`
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+881c1ac408d93bb7adaa3a51dabab9266e82eee8" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
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[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:20528e8c29e4536546f0102ce88568b16ea7538393a33fcca951030f7af10457" "/opt/rustwide/cargo-home/bin/cargo" "+881c1ac408d93bb7adaa3a51dabab9266e82eee8" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 245db9b421eb6e4fbaa1fa6790399de93a7d7542dbb847074c288b91b0189f2a
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "245db9b421eb6e4fbaa1fa6790399de93a7d7542dbb847074c288b91b0189f2a", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "245db9b421eb6e4fbaa1fa6790399de93a7d7542dbb847074c288b91b0189f2a", kill_on_drop: false }`
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[INFO] [stdout] 7231b2993ca87298183e1131ab21a69b30c02ca1ba307954287abf4cb7f0967b
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "7231b2993ca87298183e1131ab21a69b30c02ca1ba307954287abf4cb7f0967b", kill_on_drop: false }`
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[INFO] [stderr]    Compiling libprosic v0.7.3 (/opt/rustwide/workdir)
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/call/pairwise.rs:62:20
[INFO] [stdout]    |
[INFO] [stdout] 62 |     let variants = try!(utils::collect_variants(
[INFO] [stdout]    |                    ^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(deprecated)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/call/pairwise.rs:70:21
[INFO] [stdout]    |
[INFO] [stdout] 70 |     let chrom_seq = try!(reference_buffer.seq(&chrom));
[INFO] [stdout]    |                     ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/call/pairwise.rs:75:18
[INFO] [stdout]    |
[INFO] [stdout] 75 |             Some(try!(joint_model.pileup(
[INFO] [stdout]    |                  ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/call/pairwise.rs:55:62
[INFO] [stdout]    |
[INFO] [stdout] 55 | ) -> Result<Vec<Option<model::PairPileup<'a, A, B, P>>>, Box<Error>>
[INFO] [stdout]    |                                                              ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(bare_trait_objects)]` on by default
[INFO] [stdout]    = warning: this was previously accepted by the compiler but is being phased out; it will become a hard error in the 2021 edition!
[INFO] [stdout]    = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]    --> src/call/pairwise.rs:159:26
[INFO] [stdout]     |
[INFO] [stdout] 159 |         let mut writer = try!(csv::WriterBuilder::new()
[INFO] [stdout]     |                          ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/call/pairwise.rs:116:21
[INFO] [stdout]     |
[INFO] [stdout] 116 | ) -> Result<(), Box<Error>>
[INFO] [stdout]     |                     ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this was previously accepted by the compiler but is being phased out; it will become a hard error in the 2021 edition!
[INFO] [stdout]     = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/estimation/alignment_properties.rs:40:68
[INFO] [stdout]    |
[INFO] [stdout] 40 |     pub fn estimate<R: bam::Read>(bam: &mut R) -> Result<Self, Box<Error>> {
[INFO] [stdout]    |                                                                    ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this was previously accepted by the compiler but is being phased out; it will become a hard error in the 2021 edition!
[INFO] [stdout]    = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/estimation/alignment_properties.rs:142:33
[INFO] [stdout]     |
[INFO] [stdout] 142 |     ) -> Result<InsertSize, Box<Error>> {
[INFO] [stdout]     |                                 ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this was previously accepted by the compiler but is being phased out; it will become a hard error in the 2021 edition!
[INFO] [stdout]     = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/estimation/fdr/ev.rs:35:21
[INFO] [stdout]    |
[INFO] [stdout] 35 | ) -> Result<(), Box<Error>>
[INFO] [stdout]    |                     ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this was previously accepted by the compiler but is being phased out; it will become a hard error in the 2021 edition!
[INFO] [stdout]    = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/model/evidence/fragments.rs:52:89
[INFO] [stdout]    |
[INFO] [stdout] 52 | pub fn estimate_insert_size(left: &bam::Record, right: &bam::Record) -> Result<u32, Box<Error>> {
[INFO] [stdout]    |                                                                                         ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this was previously accepted by the compiler but is being phased out; it will become a hard error in the 2021 edition!
[INFO] [stdout]    = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/model/evidence/fragments.rs:56:68
[INFO] [stdout]    |
[INFO] [stdout] 56 |     let aln = |rec: &bam::Record, cigar| -> Result<(u32, u32), Box<Error>> {
[INFO] [stdout]    |                                                                    ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this was previously accepted by the compiler but is being phased out; it will become a hard error in the 2021 edition!
[INFO] [stdout]    = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/evidence/fragments.rs:120:41
[INFO] [stdout]     |
[INFO] [stdout] 120 |     ) -> Result<(LogProb, LogProb), Box<Error>> {
[INFO] [stdout]     |                                         ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this was previously accepted by the compiler but is being phased out; it will become a hard error in the 2021 edition!
[INFO] [stdout]     = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/model/evidence/reads.rs:30:49
[INFO] [stdout]    |
[INFO] [stdout] 30 |     ) -> Result<Option<(LogProb, LogProb)>, Box<Error>>;
[INFO] [stdout]    |                                                 ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this was previously accepted by the compiler but is being phased out; it will become a hard error in the 2021 edition!
[INFO] [stdout]    = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/model/evidence/reads.rs:56:49
[INFO] [stdout]    |
[INFO] [stdout] 56 |     ) -> Result<Option<(LogProb, LogProb)>, Box<Error>> {
[INFO] [stdout]    |                                                 ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this was previously accepted by the compiler but is being phased out; it will become a hard error in the 2021 edition!
[INFO] [stdout]    = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/evidence/reads.rs:101:49
[INFO] [stdout]     |
[INFO] [stdout] 101 |     ) -> Result<Option<(LogProb, LogProb)>, Box<Error>> {
[INFO] [stdout]     |                                                 ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this was previously accepted by the compiler but is being phased out; it will become a hard error in the 2021 edition!
[INFO] [stdout]     = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/evidence/reads.rs:169:49
[INFO] [stdout]     |
[INFO] [stdout] 169 |     ) -> Result<Option<(LogProb, LogProb)>, Box<Error>> {
[INFO] [stdout]     |                                                 ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this was previously accepted by the compiler but is being phased out; it will become a hard error in the 2021 edition!
[INFO] [stdout]     = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/model/sample.rs:76:17
[INFO] [stdout]    |
[INFO] [stdout] 76 |                 try!(self.reader.fetch(tid, window_start, end));
[INFO] [stdout]    |                 ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/model/sample.rs:68:82
[INFO] [stdout]    |
[INFO] [stdout] 68 |     pub fn fill(&mut self, chrom: &[u8], start: u32, end: u32) -> Result<(), Box<Error>> {
[INFO] [stdout]    |                                                                                  ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this was previously accepted by the compiler but is being phased out; it will become a hard error in the 2021 edition!
[INFO] [stdout]    = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/sample.rs:220:39
[INFO] [stdout]     |
[INFO] [stdout] 220 |     ) -> Result<Vec<Observation>, Box<Error>> {
[INFO] [stdout]     |                                       ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this was previously accepted by the compiler but is being phased out; it will become a hard error in the 2021 edition!
[INFO] [stdout]     = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/sample.rs:362:42
[INFO] [stdout]     |
[INFO] [stdout] 362 |     ) -> Result<Option<Observation>, Box<Error>> {
[INFO] [stdout]     |                                          ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this was previously accepted by the compiler but is being phased out; it will become a hard error in the 2021 edition!
[INFO] [stdout]     = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/sample.rs:363:34
[INFO] [stdout]     |
[INFO] [stdout] 363 |         let mut evidence: RefMut<evidence::reads::AbstractReadEvidence> = match variant {
[INFO] [stdout]     |                                  ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: use `dyn`: `dyn evidence::reads::AbstractReadEvidence`
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this was previously accepted by the compiler but is being phased out; it will become a hard error in the 2021 edition!
[INFO] [stdout]     = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/sample.rs:409:42
[INFO] [stdout]     |
[INFO] [stdout] 409 |     ) -> Result<Option<Observation>, Box<Error>> {
[INFO] [stdout]     |                                          ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this was previously accepted by the compiler but is being phased out; it will become a hard error in the 2021 edition!
[INFO] [stdout]     = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/sample.rs:412:44
[INFO] [stdout]     |
[INFO] [stdout] 412 |          -> Result<(LogProb, LogProb), Box<Error>> {
[INFO] [stdout]     |                                            ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this was previously accepted by the compiler but is being phased out; it will become a hard error in the 2021 edition!
[INFO] [stdout]     = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/mod.rs:275:41
[INFO] [stdout]     |
[INFO] [stdout] 275 |     ) -> Result<SinglePileup<A, P>, Box<Error>> {
[INFO] [stdout]     |                                         ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this was previously accepted by the compiler but is being phased out; it will become a hard error in the 2021 edition!
[INFO] [stdout]     = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/mod.rs:416:42
[INFO] [stdout]     |
[INFO] [stdout] 416 |     ) -> Result<PairPileup<A, B, P>, Box<Error>> {
[INFO] [stdout]     |                                          ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this was previously accepted by the compiler but is being phased out; it will become a hard error in the 2021 edition!
[INFO] [stdout]     = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/utils.rs:27:46
[INFO] [stdout]    |
[INFO] [stdout] 27 | ) -> Result<Vec<Option<model::Variant>>, Box<Error>> {
[INFO] [stdout]    |                                              ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this was previously accepted by the compiler but is being phased out; it will become a hard error in the 2021 edition!
[INFO] [stdout]    = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/utils.rs:204:62
[INFO] [stdout]     |
[INFO] [stdout] 204 |     pub fn seq(&mut self, chrom: &[u8]) -> Result<&[u8], Box<Error>> {
[INFO] [stdout]     |                                                              ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this was previously accepted by the compiler but is being phased out; it will become a hard error in the 2021 edition!
[INFO] [stdout]     = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/utils.rs:232:39
[INFO] [stdout]     |
[INFO] [stdout] 232 | ) -> Result<Vec<Option<LogProb>>, Box<Error>> {
[INFO] [stdout]     |                                       ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this was previously accepted by the compiler but is being phased out; it will become a hard error in the 2021 edition!
[INFO] [stdout]     = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/utils.rs:276:35
[INFO] [stdout]     |
[INFO] [stdout] 276 | ) -> Result<Vec<NotNan<f64>>, Box<Error>> {
[INFO] [stdout]     |                                   ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this was previously accepted by the compiler but is being phased out; it will become a hard error in the 2021 edition!
[INFO] [stdout]     = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/utils.rs:317:21
[INFO] [stdout]     |
[INFO] [stdout] 317 | ) -> Result<(), Box<Error>> {
[INFO] [stdout]     |                     ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this was previously accepted by the compiler but is being phased out; it will become a hard error in the 2021 edition!
[INFO] [stdout]     = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/utils.rs:367:30
[INFO] [stdout]     |
[INFO] [stdout] 367 |     ) -> Result<Overlap, Box<Error>> {
[INFO] [stdout]     |                              ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this was previously accepted by the compiler but is being phased out; it will become a hard error in the 2021 edition!
[INFO] [stdout]     = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred
[INFO] [stdout]    --> src/model/evidence/reads.rs:335:1
[INFO] [stdout]     |
[INFO] [stdout] 335 | / lazy_static! {
[INFO] [stdout] 336 | |     static ref PROB_CONFUSION: LogProb = LogProb::from(Prob(0.3333));
[INFO] [stdout] 337 | | }
[INFO] [stdout]     | |_^
[INFO] [stdout]     |
[INFO] [stdout]     = note: this warning originates in a macro (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred
[INFO] [stdout]   --> src/model/priors/single_cell_bulk.rs:26:1
[INFO] [stdout]    |
[INFO] [stdout] 26 | / cached! {
[INFO] [stdout] 27 | |     AMPLIF_CACHE: UnboundCache<(AlleleFreq, usize, usize), LogProb> = UnboundCache::new();
[INFO] [stdout] 28 | |     // Lodato et al. 2015, Science, Supplementary Information, pages 8f and Fig. S5 (A, C, E)
[INFO] [stdout] 29 | |     // TODO: allow for non-default Lodato model parameters, e.g. learned from the data at hand
[INFO] [stdout] ...  |
[INFO] [stdout] 96 | |     }
[INFO] [stdout] 97 | | }
[INFO] [stdout]    | |_^
[INFO] [stdout]    |
[INFO] [stdout]    = note: this warning originates in a macro (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 33 warnings emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 1m 04s
[INFO] running `Command { std: "docker" "inspect" "7231b2993ca87298183e1131ab21a69b30c02ca1ba307954287abf4cb7f0967b", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "7231b2993ca87298183e1131ab21a69b30c02ca1ba307954287abf4cb7f0967b", kill_on_drop: false }`
[INFO] [stdout] 7231b2993ca87298183e1131ab21a69b30c02ca1ba307954287abf4cb7f0967b
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:20528e8c29e4536546f0102ce88568b16ea7538393a33fcca951030f7af10457" "/opt/rustwide/cargo-home/bin/cargo" "+881c1ac408d93bb7adaa3a51dabab9266e82eee8" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] be4fed11ba70d16f5c2472b622853913fd9d1a1617ee9b548d2c873c7d96521e
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "be4fed11ba70d16f5c2472b622853913fd9d1a1617ee9b548d2c873c7d96521e", kill_on_drop: false }`
[INFO] [stderr]    Compiling version_check v0.1.5
[INFO] [stderr]    Compiling httparse v1.4.1
[INFO] [stderr]    Compiling safemem v0.3.3
[INFO] [stderr]    Compiling typeable v0.1.2
[INFO] [stderr]    Compiling language-tags v0.2.2
[INFO] [stderr]    Compiling traitobject v0.1.0
[INFO] [stderr]    Compiling miniz-sys v0.1.12
[INFO] [stderr]    Compiling memchr v0.1.11
[INFO] [stderr]    Compiling time v0.1.44
[INFO] [stderr]    Compiling num_cpus v1.13.0
[INFO] [stderr]    Compiling mime v0.2.6
[INFO] [stderr]    Compiling fern v0.4.4
[INFO] [stderr]    Compiling thread-id v2.0.0
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/call/pairwise.rs:62:20
[INFO] [stdout]    |
[INFO] [stdout] 62 |     let variants = try!(utils::collect_variants(
[INFO] [stdout]    |                    ^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(deprecated)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/call/pairwise.rs:70:21
[INFO] [stdout]    |
[INFO] [stdout] 70 |     let chrom_seq = try!(reference_buffer.seq(&chrom));
[INFO] [stdout]    |                     ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/call/pairwise.rs:75:18
[INFO] [stdout]    |
[INFO] [stdout] 75 |             Some(try!(joint_model.pileup(
[INFO] [stdout]    |                  ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/call/pairwise.rs:55:62
[INFO] [stdout]    |
[INFO] [stdout] 55 | ) -> Result<Vec<Option<model::PairPileup<'a, A, B, P>>>, Box<Error>>
[INFO] [stdout]    |                                                              ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(bare_trait_objects)]` on by default
[INFO] [stdout]    = warning: this was previously accepted by the compiler but is being phased out; it will become a hard error in the 2021 edition!
[INFO] [stdout]    = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]    --> src/call/pairwise.rs:159:26
[INFO] [stdout]     |
[INFO] [stdout] 159 |         let mut writer = try!(csv::WriterBuilder::new()
[INFO] [stdout]     |                          ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/call/pairwise.rs:116:21
[INFO] [stdout]     |
[INFO] [stdout] 116 | ) -> Result<(), Box<Error>>
[INFO] [stdout]     |                     ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this was previously accepted by the compiler but is being phased out; it will become a hard error in the 2021 edition!
[INFO] [stdout]     = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/estimation/alignment_properties.rs:40:68
[INFO] [stdout]    |
[INFO] [stdout] 40 |     pub fn estimate<R: bam::Read>(bam: &mut R) -> Result<Self, Box<Error>> {
[INFO] [stdout]    |                                                                    ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this was previously accepted by the compiler but is being phased out; it will become a hard error in the 2021 edition!
[INFO] [stdout]    = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/estimation/alignment_properties.rs:142:33
[INFO] [stdout]     |
[INFO] [stdout] 142 |     ) -> Result<InsertSize, Box<Error>> {
[INFO] [stdout]     |                                 ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this was previously accepted by the compiler but is being phased out; it will become a hard error in the 2021 edition!
[INFO] [stdout]     = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/estimation/fdr/ev.rs:35:21
[INFO] [stdout]    |
[INFO] [stdout] 35 | ) -> Result<(), Box<Error>>
[INFO] [stdout]    |                     ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this was previously accepted by the compiler but is being phased out; it will become a hard error in the 2021 edition!
[INFO] [stdout]    = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/model/evidence/fragments.rs:52:89
[INFO] [stdout]    |
[INFO] [stdout] 52 | pub fn estimate_insert_size(left: &bam::Record, right: &bam::Record) -> Result<u32, Box<Error>> {
[INFO] [stdout]    |                                                                                         ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this was previously accepted by the compiler but is being phased out; it will become a hard error in the 2021 edition!
[INFO] [stdout]    = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/model/evidence/fragments.rs:56:68
[INFO] [stdout]    |
[INFO] [stdout] 56 |     let aln = |rec: &bam::Record, cigar| -> Result<(u32, u32), Box<Error>> {
[INFO] [stdout]    |                                                                    ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this was previously accepted by the compiler but is being phased out; it will become a hard error in the 2021 edition!
[INFO] [stdout]    = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/evidence/fragments.rs:120:41
[INFO] [stdout]     |
[INFO] [stdout] 120 |     ) -> Result<(LogProb, LogProb), Box<Error>> {
[INFO] [stdout]     |                                         ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this was previously accepted by the compiler but is being phased out; it will become a hard error in the 2021 edition!
[INFO] [stdout]     = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/model/evidence/reads.rs:30:49
[INFO] [stdout]    |
[INFO] [stdout] 30 |     ) -> Result<Option<(LogProb, LogProb)>, Box<Error>>;
[INFO] [stdout]    |                                                 ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this was previously accepted by the compiler but is being phased out; it will become a hard error in the 2021 edition!
[INFO] [stdout]    = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/model/evidence/reads.rs:56:49
[INFO] [stdout]    |
[INFO] [stdout] 56 |     ) -> Result<Option<(LogProb, LogProb)>, Box<Error>> {
[INFO] [stdout]    |                                                 ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this was previously accepted by the compiler but is being phased out; it will become a hard error in the 2021 edition!
[INFO] [stdout]    = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/evidence/reads.rs:101:49
[INFO] [stdout]     |
[INFO] [stdout] 101 |     ) -> Result<Option<(LogProb, LogProb)>, Box<Error>> {
[INFO] [stdout]     |                                                 ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this was previously accepted by the compiler but is being phased out; it will become a hard error in the 2021 edition!
[INFO] [stdout]     = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/evidence/reads.rs:169:49
[INFO] [stdout]     |
[INFO] [stdout] 169 |     ) -> Result<Option<(LogProb, LogProb)>, Box<Error>> {
[INFO] [stdout]     |                                                 ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this was previously accepted by the compiler but is being phased out; it will become a hard error in the 2021 edition!
[INFO] [stdout]     = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/model/sample.rs:76:17
[INFO] [stdout]    |
[INFO] [stdout] 76 |                 try!(self.reader.fetch(tid, window_start, end));
[INFO] [stdout]    |                 ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/model/sample.rs:68:82
[INFO] [stdout]    |
[INFO] [stdout] 68 |     pub fn fill(&mut self, chrom: &[u8], start: u32, end: u32) -> Result<(), Box<Error>> {
[INFO] [stdout]    |                                                                                  ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this was previously accepted by the compiler but is being phased out; it will become a hard error in the 2021 edition!
[INFO] [stdout]    = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/sample.rs:220:39
[INFO] [stdout]     |
[INFO] [stdout] 220 |     ) -> Result<Vec<Observation>, Box<Error>> {
[INFO] [stdout]     |                                       ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this was previously accepted by the compiler but is being phased out; it will become a hard error in the 2021 edition!
[INFO] [stdout]     = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/sample.rs:362:42
[INFO] [stdout]     |
[INFO] [stdout] 362 |     ) -> Result<Option<Observation>, Box<Error>> {
[INFO] [stdout]     |                                          ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this was previously accepted by the compiler but is being phased out; it will become a hard error in the 2021 edition!
[INFO] [stdout]     = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/sample.rs:363:34
[INFO] [stdout]     |
[INFO] [stdout] 363 |         let mut evidence: RefMut<evidence::reads::AbstractReadEvidence> = match variant {
[INFO] [stdout]     |                                  ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: use `dyn`: `dyn evidence::reads::AbstractReadEvidence`
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this was previously accepted by the compiler but is being phased out; it will become a hard error in the 2021 edition!
[INFO] [stdout]     = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/sample.rs:409:42
[INFO] [stdout]     |
[INFO] [stdout] 409 |     ) -> Result<Option<Observation>, Box<Error>> {
[INFO] [stdout]     |                                          ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this was previously accepted by the compiler but is being phased out; it will become a hard error in the 2021 edition!
[INFO] [stdout]     = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/sample.rs:412:44
[INFO] [stdout]     |
[INFO] [stdout] 412 |          -> Result<(LogProb, LogProb), Box<Error>> {
[INFO] [stdout]     |                                            ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this was previously accepted by the compiler but is being phased out; it will become a hard error in the 2021 edition!
[INFO] [stdout]     = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/mod.rs:275:41
[INFO] [stdout]     |
[INFO] [stdout] 275 |     ) -> Result<SinglePileup<A, P>, Box<Error>> {
[INFO] [stdout]     |                                         ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this was previously accepted by the compiler but is being phased out; it will become a hard error in the 2021 edition!
[INFO] [stdout]     = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/mod.rs:416:42
[INFO] [stdout]     |
[INFO] [stdout] 416 |     ) -> Result<PairPileup<A, B, P>, Box<Error>> {
[INFO] [stdout]     |                                          ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this was previously accepted by the compiler but is being phased out; it will become a hard error in the 2021 edition!
[INFO] [stdout]     = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/utils.rs:27:46
[INFO] [stdout]    |
[INFO] [stdout] 27 | ) -> Result<Vec<Option<model::Variant>>, Box<Error>> {
[INFO] [stdout]    |                                              ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this was previously accepted by the compiler but is being phased out; it will become a hard error in the 2021 edition!
[INFO] [stdout]    = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/utils.rs:204:62
[INFO] [stdout]     |
[INFO] [stdout] 204 |     pub fn seq(&mut self, chrom: &[u8]) -> Result<&[u8], Box<Error>> {
[INFO] [stdout]     |                                                              ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this was previously accepted by the compiler but is being phased out; it will become a hard error in the 2021 edition!
[INFO] [stdout]     = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/utils.rs:232:39
[INFO] [stdout]     |
[INFO] [stdout] 232 | ) -> Result<Vec<Option<LogProb>>, Box<Error>> {
[INFO] [stdout]     |                                       ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this was previously accepted by the compiler but is being phased out; it will become a hard error in the 2021 edition!
[INFO] [stdout]     = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/utils.rs:276:35
[INFO] [stdout]     |
[INFO] [stdout] 276 | ) -> Result<Vec<NotNan<f64>>, Box<Error>> {
[INFO] [stdout]     |                                   ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this was previously accepted by the compiler but is being phased out; it will become a hard error in the 2021 edition!
[INFO] [stdout]     = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/utils.rs:317:21
[INFO] [stdout]     |
[INFO] [stdout] 317 | ) -> Result<(), Box<Error>> {
[INFO] [stdout]     |                     ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this was previously accepted by the compiler but is being phased out; it will become a hard error in the 2021 edition!
[INFO] [stdout]     = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/utils.rs:367:30
[INFO] [stdout]     |
[INFO] [stdout] 367 |     ) -> Result<Overlap, Box<Error>> {
[INFO] [stdout]     |                              ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this was previously accepted by the compiler but is being phased out; it will become a hard error in the 2021 edition!
[INFO] [stdout]     = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred
[INFO] [stdout]    --> src/model/evidence/reads.rs:335:1
[INFO] [stdout]     |
[INFO] [stdout] 335 | / lazy_static! {
[INFO] [stdout] 336 | |     static ref PROB_CONFUSION: LogProb = LogProb::from(Prob(0.3333));
[INFO] [stdout] 337 | | }
[INFO] [stdout]     | |_^
[INFO] [stdout]     |
[INFO] [stdout]     = note: this warning originates in a macro (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred
[INFO] [stdout]   --> src/model/priors/single_cell_bulk.rs:26:1
[INFO] [stdout]    |
[INFO] [stdout] 26 | / cached! {
[INFO] [stdout] 27 | |     AMPLIF_CACHE: UnboundCache<(AlleleFreq, usize, usize), LogProb> = UnboundCache::new();
[INFO] [stdout] 28 | |     // Lodato et al. 2015, Science, Supplementary Information, pages 8f and Fig. S5 (A, C, E)
[INFO] [stdout] 29 | |     // TODO: allow for non-default Lodato model parameters, e.g. learned from the data at hand
[INFO] [stdout] ...  |
[INFO] [stdout] 96 | |     }
[INFO] [stdout] 97 | | }
[INFO] [stdout]    | |_^
[INFO] [stdout]    |
[INFO] [stdout]    = note: this warning originates in a macro (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 33 warnings emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]    Compiling base64 v0.9.3
[INFO] [stderr]    Compiling thread_local v0.2.7
[INFO] [stderr]    Compiling aho-corasick v0.5.3
[INFO] [stderr]    Compiling unicase v1.4.2
[INFO] [stderr]    Compiling regex v0.1.80
[INFO] [stderr]    Compiling flate2 v0.2.20
[INFO] [stderr]    Compiling hyper v0.10.16
[INFO] [stderr]    Compiling env_logger v0.3.5
[INFO] [stderr]    Compiling libprosic v0.7.3 (/opt/rustwide/workdir)
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/call/pairwise.rs:62:20
[INFO] [stdout]    |
[INFO] [stdout] 62 |     let variants = try!(utils::collect_variants(
[INFO] [stdout]    |                    ^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(deprecated)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/call/pairwise.rs:70:21
[INFO] [stdout]    |
[INFO] [stdout] 70 |     let chrom_seq = try!(reference_buffer.seq(&chrom));
[INFO] [stdout]    |                     ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/call/pairwise.rs:75:18
[INFO] [stdout]    |
[INFO] [stdout] 75 |             Some(try!(joint_model.pileup(
[INFO] [stdout]    |                  ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/call/pairwise.rs:55:62
[INFO] [stdout]    |
[INFO] [stdout] 55 | ) -> Result<Vec<Option<model::PairPileup<'a, A, B, P>>>, Box<Error>>
[INFO] [stdout]    |                                                              ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(bare_trait_objects)]` on by default
[INFO] [stdout]    = warning: this was previously accepted by the compiler but is being phased out; it will become a hard error in the 2021 edition!
[INFO] [stdout]    = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]    --> src/call/pairwise.rs:159:26
[INFO] [stdout]     |
[INFO] [stdout] 159 |         let mut writer = try!(csv::WriterBuilder::new()
[INFO] [stdout]     |                          ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/call/pairwise.rs:116:21
[INFO] [stdout]     |
[INFO] [stdout] 116 | ) -> Result<(), Box<Error>>
[INFO] [stdout]     |                     ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this was previously accepted by the compiler but is being phased out; it will become a hard error in the 2021 edition!
[INFO] [stdout]     = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/estimation/alignment_properties.rs:40:68
[INFO] [stdout]    |
[INFO] [stdout] 40 |     pub fn estimate<R: bam::Read>(bam: &mut R) -> Result<Self, Box<Error>> {
[INFO] [stdout]    |                                                                    ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this was previously accepted by the compiler but is being phased out; it will become a hard error in the 2021 edition!
[INFO] [stdout]    = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/estimation/alignment_properties.rs:142:33
[INFO] [stdout]     |
[INFO] [stdout] 142 |     ) -> Result<InsertSize, Box<Error>> {
[INFO] [stdout]     |                                 ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this was previously accepted by the compiler but is being phased out; it will become a hard error in the 2021 edition!
[INFO] [stdout]     = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/estimation/fdr/ev.rs:35:21
[INFO] [stdout]    |
[INFO] [stdout] 35 | ) -> Result<(), Box<Error>>
[INFO] [stdout]    |                     ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this was previously accepted by the compiler but is being phased out; it will become a hard error in the 2021 edition!
[INFO] [stdout]    = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/model/evidence/fragments.rs:52:89
[INFO] [stdout]    |
[INFO] [stdout] 52 | pub fn estimate_insert_size(left: &bam::Record, right: &bam::Record) -> Result<u32, Box<Error>> {
[INFO] [stdout]    |                                                                                         ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this was previously accepted by the compiler but is being phased out; it will become a hard error in the 2021 edition!
[INFO] [stdout]    = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/model/evidence/fragments.rs:56:68
[INFO] [stdout]    |
[INFO] [stdout] 56 |     let aln = |rec: &bam::Record, cigar| -> Result<(u32, u32), Box<Error>> {
[INFO] [stdout]    |                                                                    ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this was previously accepted by the compiler but is being phased out; it will become a hard error in the 2021 edition!
[INFO] [stdout]    = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/evidence/fragments.rs:120:41
[INFO] [stdout]     |
[INFO] [stdout] 120 |     ) -> Result<(LogProb, LogProb), Box<Error>> {
[INFO] [stdout]     |                                         ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this was previously accepted by the compiler but is being phased out; it will become a hard error in the 2021 edition!
[INFO] [stdout]     = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/model/evidence/reads.rs:30:49
[INFO] [stdout]    |
[INFO] [stdout] 30 |     ) -> Result<Option<(LogProb, LogProb)>, Box<Error>>;
[INFO] [stdout]    |                                                 ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this was previously accepted by the compiler but is being phased out; it will become a hard error in the 2021 edition!
[INFO] [stdout]    = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/model/evidence/reads.rs:56:49
[INFO] [stdout]    |
[INFO] [stdout] 56 |     ) -> Result<Option<(LogProb, LogProb)>, Box<Error>> {
[INFO] [stdout]    |                                                 ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this was previously accepted by the compiler but is being phased out; it will become a hard error in the 2021 edition!
[INFO] [stdout]    = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/evidence/reads.rs:101:49
[INFO] [stdout]     |
[INFO] [stdout] 101 |     ) -> Result<Option<(LogProb, LogProb)>, Box<Error>> {
[INFO] [stdout]     |                                                 ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this was previously accepted by the compiler but is being phased out; it will become a hard error in the 2021 edition!
[INFO] [stdout]     = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/evidence/reads.rs:169:49
[INFO] [stdout]     |
[INFO] [stdout] 169 |     ) -> Result<Option<(LogProb, LogProb)>, Box<Error>> {
[INFO] [stdout]     |                                                 ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this was previously accepted by the compiler but is being phased out; it will become a hard error in the 2021 edition!
[INFO] [stdout]     = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/model/sample.rs:76:17
[INFO] [stdout]    |
[INFO] [stdout] 76 |                 try!(self.reader.fetch(tid, window_start, end));
[INFO] [stdout]    |                 ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/model/sample.rs:68:82
[INFO] [stdout]    |
[INFO] [stdout] 68 |     pub fn fill(&mut self, chrom: &[u8], start: u32, end: u32) -> Result<(), Box<Error>> {
[INFO] [stdout]    |                                                                                  ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this was previously accepted by the compiler but is being phased out; it will become a hard error in the 2021 edition!
[INFO] [stdout]    = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/sample.rs:220:39
[INFO] [stdout]     |
[INFO] [stdout] 220 |     ) -> Result<Vec<Observation>, Box<Error>> {
[INFO] [stdout]     |                                       ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this was previously accepted by the compiler but is being phased out; it will become a hard error in the 2021 edition!
[INFO] [stdout]     = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/sample.rs:362:42
[INFO] [stdout]     |
[INFO] [stdout] 362 |     ) -> Result<Option<Observation>, Box<Error>> {
[INFO] [stdout]     |                                          ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this was previously accepted by the compiler but is being phased out; it will become a hard error in the 2021 edition!
[INFO] [stdout]     = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/sample.rs:363:34
[INFO] [stdout]     |
[INFO] [stdout] 363 |         let mut evidence: RefMut<evidence::reads::AbstractReadEvidence> = match variant {
[INFO] [stdout]     |                                  ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: use `dyn`: `dyn evidence::reads::AbstractReadEvidence`
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this was previously accepted by the compiler but is being phased out; it will become a hard error in the 2021 edition!
[INFO] [stdout]     = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/sample.rs:409:42
[INFO] [stdout]     |
[INFO] [stdout] 409 |     ) -> Result<Option<Observation>, Box<Error>> {
[INFO] [stdout]     |                                          ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this was previously accepted by the compiler but is being phased out; it will become a hard error in the 2021 edition!
[INFO] [stdout]     = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/sample.rs:412:44
[INFO] [stdout]     |
[INFO] [stdout] 412 |          -> Result<(LogProb, LogProb), Box<Error>> {
[INFO] [stdout]     |                                            ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this was previously accepted by the compiler but is being phased out; it will become a hard error in the 2021 edition!
[INFO] [stdout]     = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/mod.rs:275:41
[INFO] [stdout]     |
[INFO] [stdout] 275 |     ) -> Result<SinglePileup<A, P>, Box<Error>> {
[INFO] [stdout]     |                                         ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this was previously accepted by the compiler but is being phased out; it will become a hard error in the 2021 edition!
[INFO] [stdout]     = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/mod.rs:416:42
[INFO] [stdout]     |
[INFO] [stdout] 416 |     ) -> Result<PairPileup<A, B, P>, Box<Error>> {
[INFO] [stdout]     |                                          ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this was previously accepted by the compiler but is being phased out; it will become a hard error in the 2021 edition!
[INFO] [stdout]     = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/utils.rs:27:46
[INFO] [stdout]    |
[INFO] [stdout] 27 | ) -> Result<Vec<Option<model::Variant>>, Box<Error>> {
[INFO] [stdout]    |                                              ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this was previously accepted by the compiler but is being phased out; it will become a hard error in the 2021 edition!
[INFO] [stdout]    = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/utils.rs:204:62
[INFO] [stdout]     |
[INFO] [stdout] 204 |     pub fn seq(&mut self, chrom: &[u8]) -> Result<&[u8], Box<Error>> {
[INFO] [stdout]     |                                                              ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this was previously accepted by the compiler but is being phased out; it will become a hard error in the 2021 edition!
[INFO] [stdout]     = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/utils.rs:232:39
[INFO] [stdout]     |
[INFO] [stdout] 232 | ) -> Result<Vec<Option<LogProb>>, Box<Error>> {
[INFO] [stdout]     |                                       ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this was previously accepted by the compiler but is being phased out; it will become a hard error in the 2021 edition!
[INFO] [stdout]     = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/utils.rs:276:35
[INFO] [stdout]     |
[INFO] [stdout] 276 | ) -> Result<Vec<NotNan<f64>>, Box<Error>> {
[INFO] [stdout]     |                                   ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this was previously accepted by the compiler but is being phased out; it will become a hard error in the 2021 edition!
[INFO] [stdout]     = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/utils.rs:317:21
[INFO] [stdout]     |
[INFO] [stdout] 317 | ) -> Result<(), Box<Error>> {
[INFO] [stdout]     |                     ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this was previously accepted by the compiler but is being phased out; it will become a hard error in the 2021 edition!
[INFO] [stdout]     = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/utils.rs:367:30
[INFO] [stdout]     |
[INFO] [stdout] 367 |     ) -> Result<Overlap, Box<Error>> {
[INFO] [stdout]     |                              ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this was previously accepted by the compiler but is being phased out; it will become a hard error in the 2021 edition!
[INFO] [stdout]     = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred
[INFO] [stdout]    --> src/model/evidence/reads.rs:335:1
[INFO] [stdout]     |
[INFO] [stdout] 335 | / lazy_static! {
[INFO] [stdout] 336 | |     static ref PROB_CONFUSION: LogProb = LogProb::from(Prob(0.3333));
[INFO] [stdout] 337 | | }
[INFO] [stdout]     | |_^
[INFO] [stdout]     |
[INFO] [stdout]     = note: this warning originates in a macro (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred
[INFO] [stdout]   --> src/model/priors/single_cell_bulk.rs:26:1
[INFO] [stdout]    |
[INFO] [stdout] 26 | / cached! {
[INFO] [stdout] 27 | |     AMPLIF_CACHE: UnboundCache<(AlleleFreq, usize, usize), LogProb> = UnboundCache::new();
[INFO] [stdout] 28 | |     // Lodato et al. 2015, Science, Supplementary Information, pages 8f and Fig. S5 (A, C, E)
[INFO] [stdout] 29 | |     // TODO: allow for non-default Lodato model parameters, e.g. learned from the data at hand
[INFO] [stdout] ...  |
[INFO] [stdout] 96 | |     }
[INFO] [stdout] 97 | | }
[INFO] [stdout]    | |_^
[INFO] [stdout]    |
[INFO] [stdout]    = note: this warning originates in a macro (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: this method call currently resolves to `<&[T; N] as IntoIterator>::into_iter` (due to autoref coercions), but that might change in the future when `IntoIterator` impls for arrays are added.
[INFO] [stdout]    --> src/model/sample.rs:612:79
[INFO] [stdout]     |
[INFO] [stdout] 612 |         for (record, true_alt_prob) in records.into_iter().zip(true_alt_probs.into_iter()) {
[INFO] [stdout]     |                                                                               ^^^^^^^^^ help: use `.iter()` instead of `.into_iter()` to avoid ambiguity: `iter`
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(array_into_iter)]` on by default
[INFO] [stdout]     = warning: this was previously accepted by the compiler but is being phased out; it will become a hard error in a future release!
[INFO] [stdout]     = note: for more information, see issue #66145 <https://github.com/rust-lang/rust/issues/66145>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error: linking with `cc` failed: exit status: 1
[INFO] [stdout]   |
[INFO] [stdout]   = note: "cc" "-m64" "-Wl,--eh-frame-hdr" "-Wl,-znoexecstack" "-Wl,--as-needed" "-L" "/opt/rustwide/rustup-home/toolchains/881c1ac408d93bb7adaa3a51dabab9266e82eee8/lib/rustlib/x86_64-unknown-linux-gnu/lib" "/opt/rustwide/target/debug/deps/libprosic-0e09d3475c7b940e.libprosic.4vsy38p2-cgu.0.rcgu.o" "/opt/rustwide/target/debug/deps/libprosic-0e09d3475c7b940e.libprosic.4vsy38p2-cgu.1.rcgu.o" "/opt/rustwide/target/debug/deps/libprosic-0e09d3475c7b940e.libprosic.4vsy38p2-cgu.10.rcgu.o" "/opt/rustwide/target/debug/deps/libprosic-0e09d3475c7b940e.libprosic.4vsy38p2-cgu.11.rcgu.o" "/opt/rustwide/target/debug/deps/libprosic-0e09d3475c7b940e.libprosic.4vsy38p2-cgu.12.rcgu.o" "/opt/rustwide/target/debug/deps/libprosic-0e09d3475c7b940e.libprosic.4vsy38p2-cgu.13.rcgu.o" "/opt/rustwide/target/debug/deps/libprosic-0e09d3475c7b940e.libprosic.4vsy38p2-cgu.14.rcgu.o" "/opt/rustwide/target/debug/deps/libprosic-0e09d3475c7b940e.libprosic.4vsy38p2-cgu.15.rcgu.o" "/opt/rustwide/target/debug/deps/libprosic-0e09d3475c7b940e.libprosic.4vsy38p2-cgu.2.rcgu.o" "/opt/rustwide/target/debug/deps/libprosic-0e09d3475c7b940e.libprosic.4vsy38p2-cgu.3.rcgu.o" "/opt/rustwide/target/debug/deps/libprosic-0e09d3475c7b940e.libprosic.4vsy38p2-cgu.4.rcgu.o" "/opt/rustwide/target/debug/deps/libprosic-0e09d3475c7b940e.libprosic.4vsy38p2-cgu.5.rcgu.o" "/opt/rustwide/target/debug/deps/libprosic-0e09d3475c7b940e.libprosic.4vsy38p2-cgu.6.rcgu.o" "/opt/rustwide/target/debug/deps/libprosic-0e09d3475c7b940e.libprosic.4vsy38p2-cgu.7.rcgu.o" "/opt/rustwide/target/debug/deps/libprosic-0e09d3475c7b940e.libprosic.4vsy38p2-cgu.8.rcgu.o" "/opt/rustwide/target/debug/deps/libprosic-0e09d3475c7b940e.libprosic.4vsy38p2-cgu.9.rcgu.o" "-o" "/opt/rustwide/target/debug/deps/libprosic-0e09d3475c7b940e" "/opt/rustwide/target/debug/deps/libprosic-0e09d3475c7b940e.4b8w3gsi4vdjbwnt.rcgu.o" "-Wl,--gc-sections" "-pie" "-Wl,-zrelro" "-Wl,-znow" "-nodefaultlibs" "-L" "/opt/rustwide/target/debug/deps" "-L" "/opt/rustwide/target/debug/build/miniz-sys-4820031e35ccc593/out" "-L" "/opt/rustwide/target/debug/build/rust-htslib-0b0f9e608afbe378/out" "-L" "/opt/rustwide/target/debug/build/bzip2-sys-0b02aad317aa3bea/out/lib" "-L" "/usr/lib/x86_64-linux-gnu" "-L" "/opt/rustwide/rustup-home/toolchains/881c1ac408d93bb7adaa3a51dabab9266e82eee8/lib/rustlib/x86_64-unknown-linux-gnu/lib" "-Wl,-Bstatic" "/opt/rustwide/rustup-home/toolchains/881c1ac408d93bb7adaa3a51dabab9266e82eee8/lib/rustlib/x86_64-unknown-linux-gnu/lib/libtest-e0d08a82dcb7da7b.rlib" "/opt/rustwide/rustup-home/toolchains/881c1ac408d93bb7adaa3a51dabab9266e82eee8/lib/rustlib/x86_64-unknown-linux-gnu/lib/libterm-24036eb8e889985c.rlib" "/opt/rustwide/rustup-home/toolchains/881c1ac408d93bb7adaa3a51dabab9266e82eee8/lib/rustlib/x86_64-unknown-linux-gnu/lib/libgetopts-759d40b5d9a6a451.rlib" "/opt/rustwide/rustup-home/toolchains/881c1ac408d93bb7adaa3a51dabab9266e82eee8/lib/rustlib/x86_64-unknown-linux-gnu/lib/libunicode_width-7590543c881e6235.rlib" "/opt/rustwide/rustup-home/toolchains/881c1ac408d93bb7adaa3a51dabab9266e82eee8/lib/rustlib/x86_64-unknown-linux-gnu/lib/librustc_std_workspace_std-56b60793e4f96438.rlib" "/opt/rustwide/target/debug/deps/libenv_logger-6d36d3554b3003ef.rlib" "/opt/rustwide/target/debug/deps/libregex-79e339a9bc3d1101.rlib" "/opt/rustwide/target/debug/deps/libutf8_ranges-7d8838a4d1510dfc.rlib" "/opt/rustwide/target/debug/deps/libregex_syntax-5f0a312e2d65b6c1.rlib" "/opt/rustwide/target/debug/deps/libthread_local-98716e15d141ac40.rlib" "/opt/rustwide/target/debug/deps/libthread_id-208d2a2df45a47e3.rlib" "/opt/rustwide/target/debug/deps/libaho_corasick-8d4f5fbf6b056b84.rlib" "/opt/rustwide/target/debug/deps/libmemchr-3662b2d77cfc25aa.rlib" "/opt/rustwide/target/debug/deps/libcached-d87a2f8c163c5be9.rlib" "/opt/rustwide/target/debug/deps/libregex-e23abf883af46f42.rlib" "/opt/rustwide/target/debug/deps/libutf8_ranges-abdde3ee8a5c208a.rlib" "/opt/rustwide/target/debug/deps/libregex_syntax-b8a2b6999f43b6a5.rlib" "/opt/rustwide/target/debug/deps/libucd_util-6ed559ca06d7f02a.rlib" "/opt/rustwide/target/debug/deps/libthread_local-79467375a3998bbe.rlib" "/opt/rustwide/target/debug/deps/libaho_corasick-2a06c38938a8f052.rlib" "/opt/rustwide/target/debug/deps/librusty_machine-8d9b370d3ea272c6.rlib" "/opt/rustwide/target/debug/deps/librulinalg-974eed8277b98ce4.rlib" "/opt/rustwide/target/debug/deps/libnum-70f4c1a47472a3ea.rlib" "/opt/rustwide/target/debug/deps/libnum_iter-ac0e13b244d32670.rlib" "/opt/rustwide/target/debug/deps/libndarray-3b07c6b897adc344.rlib" "/opt/rustwide/target/debug/deps/libnum_complex-4e135aa3abd6858f.rlib" "/opt/rustwide/target/debug/deps/libnum_traits-a6f558dd540c904a.rlib" "/opt/rustwide/target/debug/deps/libitertools-afa81ae7170598e2.rlib" "/opt/rustwide/target/debug/deps/libapprox-20fd2956a2b5a5ef.rlib" "/opt/rustwide/target/debug/deps/librgsl-8367666e1b8e2c59.rlib" "/opt/rustwide/target/debug/deps/libc_vec-f35f0b11256a2ec8.rlib" "/opt/rustwide/target/debug/deps/liblog-ed86ec8195ba7bde.rlib" "/opt/rustwide/target/debug/deps/liblog-bc17724bd34a7bc3.rlib" "/opt/rustwide/target/debug/deps/libcfg_if-755744d3ca57570c.rlib" "/opt/rustwide/target/debug/deps/librust_htslib-84f456d47255fc88.rlib" "/opt/rustwide/target/debug/deps/liblzma_sys-9e19ee45e358f487.rlib" "/opt/rustwide/target/debug/deps/libbzip2_sys-2050755bb0672eb4.rlib" "/opt/rustwide/target/debug/deps/liblibz_sys-838556ce1fa9e99b.rlib" "/opt/rustwide/target/debug/deps/liblinear_map-dd0629b627b7d8b8.rlib" "/opt/rustwide/target/debug/deps/liburl-e068dca5d15514a5.rlib" "/opt/rustwide/target/debug/deps/libpercent_encoding-a7c5562959feefae.rlib" "/opt/rustwide/target/debug/deps/libidna-8fce600d6b60dd0d.rlib" "/opt/rustwide/target/debug/deps/libunicode_normalization-a27a3c8dabf2e65f.rlib" "/opt/rustwide/target/debug/deps/libtinyvec-3ea7624e027cd19d.rlib" "/opt/rustwide/target/debug/deps/libtinyvec_macros-79e05a5247fc8fe1.rlib" "/opt/rustwide/target/debug/deps/libunicode_bidi-4760f969381f3a69.rlib" "/opt/rustwide/target/debug/deps/libmatches-e50d8b3702610141.rlib" "/opt/rustwide/target/debug/deps/liblazy_static-dbe219c565973cc2.rlib" "/opt/rustwide/target/debug/deps/libitertools-ba593b23e215d2fc.rlib" "/opt/rustwide/target/debug/deps/libieee754-2877269f357fa2d5.rlib" "/opt/rustwide/target/debug/deps/libbitflags-349f312ea2cff189.rlib" "/opt/rustwide/target/debug/deps/libbio-bb312c2eef723472.rlib" "/opt/rustwide/target/debug/deps/libfxhash-872fa3ddce480efd.rlib" "/opt/rustwide/target/debug/deps/libvec_map-777120731a531ea8.rlib" "/opt/rustwide/target/debug/deps/libstatrs-d370a4fcceac719d.rlib" "/opt/rustwide/target/debug/deps/librand-851e7dce04a0003f.rlib" "/opt/rustwide/target/debug/deps/librand-699ad0519c054f3e.rlib" "/opt/rustwide/target/debug/deps/liblibc-eda38a22efc4a8fd.rlib" "/opt/rustwide/target/debug/deps/libfnv-03632dd09ca25027.rlib" "/opt/rustwide/target/debug/deps/libbv-4b25b76408dd2031.rlib" "/opt/rustwide/target/debug/deps/libquick_error-9cd81c23851a22ab.rlib" "/opt/rustwide/target/debug/deps/libordered_float-22d31c15a5b0113c.rlib" "/opt/rustwide/target/debug/deps/libnum_integer-8d57ed49bf6d47e5.rlib" "/opt/rustwide/target/debug/deps/libnewtype_derive-9c2357b410de2450.rlib" "/opt/rustwide/target/debug/deps/libndarray-67fa4b0deba26af1.rlib" "/opt/rustwide/target/debug/deps/libnum_complex-1002eaaa6bff5d3c.rlib" "/opt/rustwide/target/debug/deps/libmatrixmultiply-a09a14fa52017104.rlib" "/opt/rustwide/target/debug/deps/librawpointer-1df88b56d67736f8.rlib" "/opt/rustwide/target/debug/deps/libmultimap-5362fefe4bb42795.rlib" "/opt/rustwide/target/debug/deps/libitertools_num-3da78e14e4458cb1.rlib" "/opt/rustwide/target/debug/deps/libitertools-8dfeabfc3f21c4af.rlib" "/opt/rustwide/target/debug/deps/libeither-a82658b22977cc2a.rlib" "/opt/rustwide/target/debug/deps/libcustom_derive-154fcd0d24dfe5e8.rlib" "/opt/rustwide/target/debug/deps/libcsv-464e3407a0b2ed05.rlib" "/opt/rustwide/target/debug/deps/libryu-8dbd57cf09aa6df6.rlib" "/opt/rustwide/target/debug/deps/libitoa-8e758d1d5247eab4.rlib" "/opt/rustwide/target/debug/deps/libcsv_core-52c33fb6fa205f2a.rlib" "/opt/rustwide/target/debug/deps/libbstr-e6691845d6fdb611.rlib" "/opt/rustwide/target/debug/deps/libregex_automata-622a0acdcd0403e8.rlib" "/opt/rustwide/target/debug/deps/libbyteorder-a08bfedee3afd0a5.rlib" "/opt/rustwide/target/debug/deps/libserde-8b43198fe07c31d8.rlib" "/opt/rustwide/target/debug/deps/libbytecount-38cb29eb019bf70b.rlib" "/opt/rustwide/target/debug/deps/libbit_set-5c09540f497cd714.rlib" "/opt/rustwide/target/debug/deps/libbit_vec-db1466d940e13144.rlib" "/opt/rustwide/target/debug/deps/libapprox-efe2f4bc7a235053.rlib" "/opt/rustwide/target/debug/deps/libnum_traits-b9d75a04b4714f47.rlib" "/opt/rustwide/target/debug/deps/libbio_types-eecedcbc899aca25.rlib" "/opt/rustwide/target/debug/deps/libthiserror-fafb8359b776358c.rlib" "/opt/rustwide/target/debug/deps/libregex-304a182fb235bf3f.rlib" "/opt/rustwide/target/debug/deps/libaho_corasick-95e05f880ff50868.rlib" "/opt/rustwide/target/debug/deps/libmemchr-ed39d34d53eebdc4.rlib" "/opt/rustwide/target/debug/deps/libregex_syntax-7f67f9c47fcbf828.rlib" "/opt/rustwide/target/debug/deps/liblazy_static-ff2d4c059a61c830.rlib" "-Wl,--start-group" "/opt/rustwide/rustup-home/toolchains/881c1ac408d93bb7adaa3a51dabab9266e82eee8/lib/rustlib/x86_64-unknown-linux-gnu/lib/libstd-c6dddd3d354e6bea.rlib" "/opt/rustwide/rustup-home/toolchains/881c1ac408d93bb7adaa3a51dabab9266e82eee8/lib/rustlib/x86_64-unknown-linux-gnu/lib/libpanic_unwind-c2ca47afdcc5e309.rlib" "/opt/rustwide/rustup-home/toolchains/881c1ac408d93bb7adaa3a51dabab9266e82eee8/lib/rustlib/x86_64-unknown-linux-gnu/lib/libminiz_oxide-b47be2942017e108.rlib" "/opt/rustwide/rustup-home/toolchains/881c1ac408d93bb7adaa3a51dabab9266e82eee8/lib/rustlib/x86_64-unknown-linux-gnu/lib/libadler-20a1e49116ab0df9.rlib" "/opt/rustwide/rustup-home/toolchains/881c1ac408d93bb7adaa3a51dabab9266e82eee8/lib/rustlib/x86_64-unknown-linux-gnu/lib/libobject-25e09d9868291683.rlib" "/opt/rustwide/rustup-home/toolchains/881c1ac408d93bb7adaa3a51dabab9266e82eee8/lib/rustlib/x86_64-unknown-linux-gnu/lib/libaddr2line-9c99fb6e5ca5159e.rlib" "/opt/rustwide/rustup-home/toolchains/881c1ac408d93bb7adaa3a51dabab9266e82eee8/lib/rustlib/x86_64-unknown-linux-gnu/lib/libgimli-85040d7563599960.rlib" "/opt/rustwide/rustup-home/toolchains/881c1ac408d93bb7adaa3a51dabab9266e82eee8/lib/rustlib/x86_64-unknown-linux-gnu/lib/libstd_detect-0e4f7587da8acf20.rlib" "/opt/rustwide/rustup-home/toolchains/881c1ac408d93bb7adaa3a51dabab9266e82eee8/lib/rustlib/x86_64-unknown-linux-gnu/lib/librustc_demangle-7be0a6711ed15b5c.rlib" "/opt/rustwide/rustup-home/toolchains/881c1ac408d93bb7adaa3a51dabab9266e82eee8/lib/rustlib/x86_64-unknown-linux-gnu/lib/libhashbrown-00672fabc4ff9c9d.rlib" "/opt/rustwide/rustup-home/toolchains/881c1ac408d93bb7adaa3a51dabab9266e82eee8/lib/rustlib/x86_64-unknown-linux-gnu/lib/librustc_std_workspace_alloc-72fe231ef0473d15.rlib" "/opt/rustwide/rustup-home/toolchains/881c1ac408d93bb7adaa3a51dabab9266e82eee8/lib/rustlib/x86_64-unknown-linux-gnu/lib/libunwind-019d54ecc304b655.rlib" "/opt/rustwide/rustup-home/toolchains/881c1ac408d93bb7adaa3a51dabab9266e82eee8/lib/rustlib/x86_64-unknown-linux-gnu/lib/libcfg_if-cc7d9343e4f608be.rlib" "/opt/rustwide/rustup-home/toolchains/881c1ac408d93bb7adaa3a51dabab9266e82eee8/lib/rustlib/x86_64-unknown-linux-gnu/lib/liblibc-e41c6d24baeb2249.rlib" "/opt/rustwide/rustup-home/toolchains/881c1ac408d93bb7adaa3a51dabab9266e82eee8/lib/rustlib/x86_64-unknown-linux-gnu/lib/liballoc-9849bb0fbad7f0f5.rlib" "/opt/rustwide/rustup-home/toolchains/881c1ac408d93bb7adaa3a51dabab9266e82eee8/lib/rustlib/x86_64-unknown-linux-gnu/lib/librustc_std_workspace_core-a1fd7734706d5518.rlib" "/opt/rustwide/rustup-home/toolchains/881c1ac408d93bb7adaa3a51dabab9266e82eee8/lib/rustlib/x86_64-unknown-linux-gnu/lib/libcore-c8ded1707ad10767.rlib" "-Wl,--end-group" "/opt/rustwide/rustup-home/toolchains/881c1ac408d93bb7adaa3a51dabab9266e82eee8/lib/rustlib/x86_64-unknown-linux-gnu/lib/libcompiler_builtins-8b33f9cbbc9652fe.rlib" "-Wl,-Bdynamic" "-llzma" "-lz" "-lgcc_s" "-lutil" "-lrt" "-lpthread" "-lm" "-ldl" "-lc"
[INFO] [stdout]   = note: /usr/bin/ld: /opt/rustwide/target/debug/deps/librgsl-8367666e1b8e2c59.rlib(rgsl-8367666e1b8e2c59.rgsl.7jwi8kjx-cgu.2.rcgu.o): in function `rgsl::randist::gaussian::gaussian_pdf':
[INFO] [stdout]           /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/GSL-1.1.0/src/randist/gaussian.rs:20: undefined reference to `gsl_ran_gaussian_pdf'
[INFO] [stdout]           /usr/bin/ld: /opt/rustwide/target/debug/deps/librgsl-8367666e1b8e2c59.rlib(rgsl-8367666e1b8e2c59.rgsl.7jwi8kjx-cgu.2.rcgu.o): in function `rgsl::randist::gaussian::ugaussian_P':
[INFO] [stdout]           /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/GSL-1.1.0/src/randist/gaussian.rs:73: undefined reference to `gsl_cdf_ugaussian_P'
[INFO] [stdout]           /usr/bin/ld: /opt/rustwide/target/debug/deps/librgsl-8367666e1b8e2c59.rlib(rgsl-8367666e1b8e2c59.rgsl.7jwi8kjx-cgu.9.rcgu.o): in function `rgsl::error::erfc':
[INFO] [stdout]           /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/GSL-1.1.0/src/error.rs:28: undefined reference to `gsl_sf_erfc'
[INFO] [stdout]           collect2: error: ld returned 1 exit status
[INFO] [stdout]           
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error: aborting due to previous error; 34 warnings emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr] error: could not compile `libprosic`
[INFO] [stderr] 
[INFO] [stderr] To learn more, run the command again with --verbose.
[INFO] running `Command { std: "docker" "inspect" "be4fed11ba70d16f5c2472b622853913fd9d1a1617ee9b548d2c873c7d96521e", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "be4fed11ba70d16f5c2472b622853913fd9d1a1617ee9b548d2c873c7d96521e", kill_on_drop: false }`
[INFO] [stdout] be4fed11ba70d16f5c2472b622853913fd9d1a1617ee9b548d2c873c7d96521e
